Package: vDiveR 2.2.1

vDiveR: Visualization of Viral Protein Sequence Diversity Dynamics

To ease the visualization of outputs from Diversity Motif Analyser ('DiMA'; <https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity motifs (index and its variants – major, minor and unique) for elucidation of the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/> for more information.

Authors:Pendy Tok [aut, cre], Li Chuin Chong [aut], Evgenia Chikina [aut], Yin Cheng Chen [aut], Mohammad Asif Khan [aut]

vDiveR_2.2.1.tar.gz
vDiveR_2.2.1.zip(r-4.7-any)vDiveR_2.2.1.zip(r-4.6-any)vDiveR_2.2.1.zip(r-4.5-any)
vDiveR_2.2.1.tgz(r-4.6-any)vDiveR_2.2.1.tgz(r-4.5-any)
vDiveR_2.2.1.tar.gz(r-4.7-any)vDiveR_2.2.1.tar.gz(r-4.6-any)
vDiveR_2.2.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
vDiveR/json (API)

# Install 'vDiveR' in R:
install.packages('vDiveR', repos = c('https://pendy05.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pendy05/vdiver/issues

Datasets:

On CRAN:

Conda:

conservation-leveldiversityentropysequencesviralvisualization

3.48 score 3 scripts 282 downloads 10 exports 97 dependencies

Last updated from:8aa7571bb5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK230
source / vignettesOK240
linux-release-x86_64OK199
macos-release-arm64OK177
macos-oldrel-arm64OK198
windows-devel-x86_64OK108
windows-release-x86_64OK108
windows-oldrel-x86_64OK112
wasm-releaseOK141

Exports:concat_conserved_kmerjson2csvmetadata_extractionplot_conservation_levelplot_correlationplot_dynamics_proteinplot_dynamics_proteomeplot_entropyplot_timeplot_world_map

Dependencies:abindaskpassbackportsbootbroomcarcarDataclicolorspacecommonmarkcorrplotcowplotcpp11curlDerivdoBydplyrfarverforecastFormulafracdiffgenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehttrisobandjpegjsonlitelabelinglatticelifecyclelitedownlme4lmtestmagrittrmapsmarkdownMASSMatrixMatrixModelsmgcvmimeminqamodelrnlmenloptrnnetnumDerivopensslpatchworkpbkrtestpillarpkgconfigpngpolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrentrezrlangrstatixS7scalesSparseMstringdiststringistringrsurvivalsystibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrxfunXMLxml2zoo